Mokotedi was placed on suspension allegedly over the leaking of a confidential report.
The president plans to institute an inquiry into the NPA head's fitness to hold office.
The presidency has instituted an inquiry into whether Mxolisi Nxasana is fit to hold his post.
Prince Mokotedi believes the NPA is suffering the effects of the disbanded Scorpions unit.
Prince Mokotedi says he acted with integrity when disseminating his report on Glynnis Breytenbach.
Prince Mokotedi had until the end of business on Monday to say why he shouldn't be suspended.